The present invention is an apparatus and method for purifying and isolating nucleic acid. The system uses one or more automated stations to perform steps of the method, including loading a sample onto a solid support in a processing container, purifying the sample, and isolating nucleic acid from the sample. A pump or vacuum may be used in the apparatus of the present invention for supplying fluids to the sample. A pump, vacuum or centrifuge may be used to separate impurities from the sample or to separate nucleic acid from the solid support. Exemplary solid supports and sample processing containers are disclosed.