Systems Biology Graphical Notation

Systems Biology Graphical Notation

The SBGN project is a free and open community effort aiming to develop high quality, standard graphical languages to represent biological processes and interactions.

All edits

Edits on 24 May, 2020
Golden AI"Wikidata import from WikidataImport2"
Golden AI edited on 24 May, 2020 9:24 pm
Edits made to:
Infobox (+1 properties)

Infobox

Wikidata entity ID
Q4048697
Edits on 9 October, 2019
Meredith Hanel
Meredith Hanel edited on 9 October, 2019 1:07 am
Edits made to:
Article (+797 characters)

Article

SBGN is an international community effort aimed to standardize the visualisation of pathways and networks for the purpose of efficient and accurate exchange of biological knowledge between research communities from diverse backgrounds, industry and player in systems biology.

...

The visual languages covered by SBGN are Process Description (PD), Entity Relationship and Activity Flow. The Process Description can show molecular interactions in a network of biochemical entities. The Entity Relationship language allows the visualization of influences of entities nodes on other relationships. The Activity Flow language shows the flow of information between biochemical entities in a network.

...

Process Description (PD) is closest to metabolic and regulatory pathways seen in biological literature and textbooks and represents mechanistic and temporal dependencies of biological interactions and transformations as a graph. There are different types of nodes which include entity pools like metabolites, proteins, genes and complexes. There are also processes like reactions, associations and influences. Relationships between the nodes such as consumption, production, stimulation and inhibition are described.

Edits on 6 November, 2018
Meredith Hanel
Meredith Hanel edited on 6 November, 2018 2:54 pm
Edits made to:
Categories (+1 topics)
Edits on 5 November, 2018
Carla Faraguna
Carla Faraguna approved a suggestion from Golden's AI on 5 November, 2018 7:12 pm
Edits made to:
Article (+14/-14 characters)

Article

The development of SBGN occurred during 2005-2008 with support from the Japanese New Energy and Industrial Technology Development Organization (NEDO). Principle investigators were Hiroaki KitanoHiroaki Kitano, Akira Funahashi, Nicolas Le Novere and Michael Hucka. Additional support has been provided by the OIST, BBSRC, EML Research GmbH, the Beckman Institute BNMC and NSF.

Carla Faraguna
Carla Faraguna edited on 5 November, 2018 7:12 pm
Edits made to:
Article

Article

...

Meredith Hanel
Meredith Hanel edited on 5 November, 2018 2:53 am
Edits made to:
Description (+166 characters)
Article (+773 characters)
People (+6 rows) (+12 cells) (+237 characters)
Categories (+1 topics)
Topic thumbnail

Systems Biology Graphical Notation

The SBGN project is a free and open community effort aiming to develop high quality, standard graphical languages to represent biological processes and interactions.

Article

The development of SBGN occurred during 2005-2008 with support from the Japanese New Energy and Industrial Technology Development Organization (NEDO). Principle investigators were Hiroaki Kitano, Akira Funahashi, Nicolas Le Novere and Michael Hucka. Additional support has been provided by the OIST, BBSRC, EML Research GmbH, the Beckman Institute BNMC and NSF.

The visual languages covered by SBGN are Process Description, Entity Relationship and Activity Flow. The Process Description can show molecular interactions in a network of biochemical entities. The Entity Relationship language allows the visualization of influences of entities nodes on other relationships. The Activity Flow language shows the flow of information between biochemical entities in a network.

People

Name
Role
Related Golden topics

Falk Schreiber

Scientific community member

Gary Bader

Scientific community member

Hiroaki Kitano

Scientific community member

Igor Goryanin

Scientific community member

Michael Hucka

Scientific community member

Paul Thomas

Scientific community member

Categories

Edits on 1 January, 2017
Golden AI"Initial topic creation"
Golden AI created this topic on 1 January, 2017 12:00 am
Edits made to:
Article
Topic thumbnail

 Systems Biology Graphical Notation

The SBGN project is a free and open community effort aiming to develop high quality, standard graphical languages to represent biological processes and interactions.

No more activity to show.

Golden logo
Text is available under the Creative Commons Attribution-ShareAlike 4.0; additional terms apply. By using this site, you agree to our Terms & Conditions.