Cluster: Biological mapping projects

Cluster: Biological mapping projects

A cluster of topics related to biological mapping and biological databases.

All edits by  Meredith Hanel 

Edits on 20 May, 2020
Meredith Hanel
Meredith Hanel edited on 20 May, 2020
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  • PhenoscapePhenoscape
Edits on 1 Nov, 2019
Meredith Hanel
Meredith Hanel edited on 1 Nov, 2019
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Edits on 5 Sep, 2019
Meredith Hanel
Meredith Hanel edited on 5 Sep, 2019
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  • Blue Brain Project
Edits on 6 Jul, 2019
Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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  • Worm Atlas (C. elegans)
Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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Cell, tissue and embryoembryogenesis maps
Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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  • Single cell RNA sequencing map of embryogenesis in zebrafish
Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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  • Single cell RNA sequencing map of embryogenesis in Xenopus
  • Single cell RNA sequencing map of embryogenesis in zebrafish
Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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Cells and microscopy
Cell, tissue and embryo maps
Edits on 6 Jul, 2019
Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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Proteomics is the study of the full protein complement of a cell, tissue or organism. Proteomics and protein databases and can be used to map differences in protein composition and shape to health and disease.

Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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Proteomics
Proteins and proteomics

Proteomics is the study of the full protein complement of a cell, tissue or organism. Proteomics and protein databases and can be used to map differences in protein composition and shape to disease.

Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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Most biological maps and catalogs allow comparisons between human and non-human model organisms and provide information about homologous genes or corresponding processes across different organisms. Model organisms such as yeast, fruit flies and mice are used in research as a proxy for understanding human biology because they have genes and biological processes in common with humans.

Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
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Phenomics is the systematic study of measurable phenotypes or characteristics on a genome-wide scale. Ontologies are used for cataloging the biological roles of gene products using a common language. The characterization of the phenotype of organisms with gene mutations or gene knock outs is used to understand gene function. Both genotype and environment determine phenotype. Since not all genetic differences between individuals have an impact on phenotype, genotype-phenotype association projects aim to catalogue the genotypes that are associated with observable or measurable phenotypes such as disease or altered cell function.

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Phenomics is the systematic study of measurable phenotypes or characteristics on a genome-wide scale. Ontologies are used for cataloging the biological roles of gene products using a common language. The characterization of the phenotype of organisms with gene mutations or gene knock outs is used to understand gene function. Both genotype and environment determine phenotype. Since not all genetic differences between individuals have an impact on phenotype, genotype-phenotype association projects aim to catalogue the genotypes that are associated with observable or measurable phenotypes such as disease or altered cell function.

Meredith Hanel
Meredith Hanel edited on 6 Jul, 2019
Edits made to:
Article (+634 characters)
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Phenomics is the systematic study of measurable phenotypes or characteristics on a genome-wide scale. Ontologies are used for cataloging the biological roles of gene products using a common language. The characterization of the phenotype of organisms with gene mutations or gene knock outs is used to understand gene function. Both genotype and environment determine phenotype. Since not all genetic differences between individuals have an impact on phenotype, genotype-phenotype association projects aim to catalogue the genotypes that are associated with observable or measurable phenotypes such as disease or altered cell function.

Edits on 3 Jul, 2019
Meredith Hanel
Meredith Hanel edited on 3 Jul, 2019
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  • Map of Life (MOL)
Meredith Hanel
Meredith Hanel edited on 3 Jul, 2019
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  • The Biogeographic Atlas of the Southern Ocean
  • Ocean Biogeographic Information System (OBIS)
Meredith Hanel
Meredith Hanel edited on 3 Jul, 2019
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  • The Barcode of Life Data System (BOLD) developed at the Centre for Biodiversity Genomics in Canada
  • International Barcode of Life (iBOL), a research alliance that overseeing BARCODE 500K, BIOSCAN and the Planetary Biodiversity Mission (PBM)
Meredith Hanel
Meredith Hanel approved a suggestion from Golden's AI on 3 Jul, 2019
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  • The Gene OntologyGene Ontology (GO) resource and GO Consortium - Computational models of biological systems from genes to molecular pathways to organism for the understanding of gene function
Meredith Hanel
Meredith Hanel approved a suggestion from Golden's AI on 3 Jul, 2019
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  • Plant Ontology - structured vocabulary and database resource that links plant anatomyplant anatomy, morphology and growth and development to plant genomics data
Meredith Hanel
Meredith Hanel approved a suggestion from Golden's AI on 3 Jul, 2019
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  • National Plant Phenomics Centre (IBERS Gogerddan, WalesWales, UK)
Edits on 3 Jul, 2019
Meredith Hanel
Meredith Hanel edited on 3 Jul, 2019
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Animals - Livestock and domesticated animals
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Animals - Undomesticated
  • Chimpanzee Genome Project
  • AgBase - Resource for functional analysis of agricultural plant and animal gene products and Gene Ontology annotations
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NaturalBacteria and undomesticated organismsarchaea
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Viruses
  • Virus-Host DB
Microbiome projects (non human)
  • Earth Microbiome Project
  • Project Acari - microbiome of ticks
Biodiversity
  • AgBase - Resource for functional analysis of agricultural plant and animal gene products and Gene Ontology annotations
Microbiome
  • Project Acari - microbiome of ticks
  • Earth Microbiome Project
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